Publications
Publications
Selected publications:
David, M.M. 2021. The role of microbiome in autism: All that we know about all that we don't know. mSystems 6(2): e00234-21.
David, M.M., Tataru, C., Daniels, J., Schwartz, J., Keating, J., Hampton-Marcell, J., Gottel, N., Gilbert, J., and Wall, D.P. 2021. Children with autism and their typically developing siblings differ in amplicon sequence variants and predicted functions of stool-associated microbes. mSystems 6(2): e00193-20.
Tataru, C. and David, M.M. 2020. Decoding the language of microbiomes using word-embedding techniques, and applications in inflammatory bowel disease. PLoS Comput Biol 4;16(5):e1007859. doi: 10.1371/journal.pcbi.1007859.
Diaz-Beltran, L., Esteban, F.J., Varma, M., Ortuzk, A., David, M. and Wall, D.P. 2017. Cross-disorder comparative analysis of comorbid conditions reveals novel autism candidate genes. BMC Genomics 19(1):315.
David, M.M., Enard, D., Ozturk, A., Daniels, J., Jung, J.Y., Diaz-Beltran, L., and D.P. Wall. 2016. Comorbid analysis of genes associated with autism spectrum disorders reveals differential evolutionary constraints. 2016. PloS ONE 11(7)e0157937.
Hultman, J., Waldrop, M.P., Mackelprang, R., David, M., McFarland, J., Blazewicz, S.J., Harden, J., Turetsky, M.R., McGuire, A.D., Shah, M.B., VerBerkmoes, N.C., Lee, L.H., Mavrommatis, K., and Jansson, J.K. 2015. Multi-omics of permafrost, active layer and thermokarst bog soil microbiomes. Nature 521(7551):208-212.
Sochat, V., David, M., and Wall, D.P. 2015. Translational meta-analytical methods to localize the regulatory patterns of neurological disorders in the human brain. AMIA Ann. Symp. Proc. 2015, 2073.
David, M.M., Cecillon, S., Warne, B., Prestat, E., Jansson, J.K., and Vogel, T.M. 2015. Microbial ecology of chlorinated solvent biodegradation. Environ. Microbiol. 17(12):4835-4850.
Prestat, E.*, David, M.M.*, Hultman, J., Tas, N., Lamendella, R., Dvornik, J., Mackelprang, R., Myrold, D.D., Jumpponen, A., Tringe, S.G., Holman, E., Mavromatis, K. and Jansson, J.K. 2014. FOAM (Functional Ontology Assignments for Metagenomes): A hidden Markov Model (HMM) database with environmental focus. Nucleic Acids Res. 42(10):e145-e145. *both authors contributed equally to this work
Bravo, D., Martin, G., David, M.M., Cailleau, G., Verrecchia, E. and Junier, P. 2013. Identification of active oxalotrophic bacteria by Bromodeoxyuridine DNA labeling in a microcosm soil experiment. FEMS Microbiol. Letts. 348(2):103-111.
Nicora, C.D., Anderson, B.J., Callister, S.J., Norbeck, A.D., Purvine, S.O., Jansson, J.K., Mason, O.U., David, M., Jurelevicius, D., Smith, R.D. and Lipton, M.S. 2013. Amino acid treatment enhances protein recovery from sediment and soils for metaproteomic studies. Proteomics 13(18-19):2776-2785.
Mackelprang, R., Waldrop, M.P., DeAngelis, K.M., David, M.M., Chavarria, K.L., Blazewicz, S.J., Rubin, E.M., and Jansson, J.K. 2011. Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw. Nature 480 (7377):368-371.
Full list of publications on Google Scholar